What is QuickBooks Full-Service Payroll? QuickBooks Full-Service Payroll is web-based payroll system that integrates with the QuickBooks accounting platform. In which Users can manage employee profiles to determine such things as pay rate, pay schedule and method of payment. Payroll can then be reviewed and submitted at any time, accompanied by detailed reports showing total payroll cost, pay compared between periods and cost breakdowns between wages and taxes, and between employer and employee. The option to print pay stubs is also available.